Technical development: Difference between revisions

Revision as of 22:47, 15 February 2011

CGI Extravaganza! pulling categories from mediawiki(SNPedia)

local cgi with Fako & Natasha (feb,15th). From the terminal (local host), this python script pulls categories (default on 10) from SNPedia.

#!/usr/bin/python

import json, urllib2

search = u'Rs1001179' # quotes are string.
url = u'http://www.snpedia.com/api.php?action=query&format=json&redirects=true&generator=categories&titles=' + search
request = urllib2.Request(url)  
response = urllib2.urlopen(request)
result = response.read() 

f = json.loads(result)
print type(f)
g = json.dumps(f) # dump makes back into a string
print type(g)

for page in f['query']['pages'].itervalues():
        print page['title']

-Meaning that rsid number Rs1001179 is found in 10 categories in following results (terminal):

<type 'dict'>
<type 'str'>
Category:On chip Illumina Human 1M
Category:SNPs on chromosome 11
Category:In dbSNP
Category:Is a snp
Category:On chip 23andMe v3
Category:On chip HumanOmni1Quad
Category:On chip 23andMe v2
Category:Has population
Category:On chip 23andMe v1
Category:Has genotype

Server cgi with Michael (evening of feb,15th), viewed in browser

-first connect to the pzwart3 server in terminal:

sshfs awu@pzwart3.wdka.hro.nl:public_html mnt

-in index.html i define the parameters:

hello <br /><br />
my name is amy yeah

<p style="background: #ea9010; ">'rs10196796', '2', '229507242', 'TT'</p>

<div style="float: left; width: 20px; height: 20px; background: #ea9010; margin: 1px"></div>
<div style="float: left; width: 20px; height: 20px; background: #ea9010; margin: 1px"></div>
<div style="float: left; width: 20px; height: 20px; background: #eaffaa; margin: 1px"></div>
<div style="float: left; width: 20px; height: 20px; background: #ea3333; margin: 1px"></div>

<!-- http://pzwart3.wdka.hro.nl/~awu/ -->

@@ Line 1: / Line 1: @@
 ==CGI Extravaganza! pulling categories from mediawiki(SNPedia)==
-*local cgi with Fako & Natasha (feb,15th). From the terminal (local host), this script pulls categories (default on 10) from SNPedia.
+*local cgi with Fako & Natasha (feb,15th). From the terminal (local host), this python script pulls categories (default on 10) from SNPedia.
 <source lang="python">
@@ Line 22: / Line 22: @@
 </source>
-Meaning that rsid number Rs1001179 is found in 10 categories in following results (terminal):
+-Meaning that rsid number Rs1001179 is found in 10 categories in following results (terminal):
-<source lang="python">
+<source lang="bash">
 <type 'dict'>
 <type 'str'>
@@ Line 37: / Line 37: @@
 Category:On chip 23andMe v1
 Category:Has genotype
+</source>
+*Server cgi with Michael (evening of feb,15th), viewed in browser
+-first connect to the pzwart3 server in terminal:
+<source lang="bash">
+sshfs awu@pzwart3.wdka.hro.nl:public_html mnt
+</source>
+-in index.html i define the parameters:
+<source lang="html">
+hello <br /><br />
+my name is amy yeah
+<p style="background: #ea9010; ">'rs10196796', '2', '229507242', 'TT'</p>
+<div style="float: left; width: 20px; height: 20px; background: #ea9010; margin: 1px"></div>
+<div style="float: left; width: 20px; height: 20px; background: #ea9010; margin: 1px"></div>
+<div style="float: left; width: 20px; height: 20px; background: #eaffaa; margin: 1px"></div>
+<div style="float: left; width: 20px; height: 20px; background: #ea3333; margin: 1px"></div>
+<!-- http://pzwart3.wdka.hro.nl/~awu/ -->
 </source>